Cook Freeman and Wooding Robin (1997). Three errors and a scaling factor Wispas no. 66, 1997

Cook Freeman et al. (2007). Thermal properties of soils in Shanxi Province, China Wispas no. 97, July 2007

Cook FJ (1988). Water in wonderland? Wispas, no. 41, 1988

Cook Freeman and Barton Paul (1990). Soil physics and hydrology Wispas no. 45, 1990

Cook Freeman (1990). What does an auger hole measure? Wispas no. 45, 1990

Cook Freeman and Thorne Alan (1990). Whakarewarewa revisited Wispas no. 47, 1990

Cook Freeman, Singleton P, Lilley G, Hayes M and Ward R (1991). Hydraulic conductivity by suction permeameters Wispas no. 48, 1991

Cook Freeman, Lilley G, Hayes M and Ward R (1991). What variability? Wispas no. 48, 1991

Cook Freeman, Taylor Jim and Moran Chris (1992). Lasers in the jungle (well, would you believe field?) Wispas no. 52, 1992

Cook Freeman, Tan Yunhu and Smith Chris (1995). Acid drainage Wispas no.61, 1995

Cook FJ (1981). Hydraulic conductivity and soil structure Wispas, no. 18, 1981

Cook FJ, Parfitt R. and Heine Jan (1981). Plants, water and soil Wispas, no. 19, 1981

Cook Freeman and Orchard Val (1982). Microbial activity and soil water Wispas, no. 21, 1982

Cook Freeman (1983). Irrigation of citrus in the Cook Islands - no response!? Wispas, no. 26, 1983

Cook Freeman (1984). Swamped in the Waikato Wispas, no. 37, 1987

Cook FJ and Cresswell HP (2008). Chapter 84. Estimation of Soil Hydraulic Properties Soil Sampling and Methods of Analysis. MR Carter and EG Gregorich (Eds.), Canadian Society of Soil Science, Taylor and Francis, LLC, Boca Raton, Fl, 1139-1161

Minasny B and Cook F (2010). Sorptivity of Soils Encyclopedia of Agrophysics. Ed. J Glinski Springer

Cook FJ, Lilley GP and Nunns RA (1993). Unsaturated hydraulic conductivity and sorptivity: Laboratory measurement Soil Sampling and Methods of Analysis. MR Carter (Ed.), Canadian Society of Soil Science, Lewis Publishers, Boca Raton Fl. pp. 615-624

Stirzaker RJ, Bunn D, Cook FJ, Sutton BG and White I (1995). No-tillage vegetable production using cover crops and alley cropping Soil Management for Sustainable Agriculture (Eds H Cook and H Lee)

Topp GC, Reynolds WD, Cook FJ, Kirby JM and Carter MR (1997). Chapter 2. Physical Attributes of Soil Quality Soil Quality for Crop Production. (Eds EG Gregorich and MR Carter), Developments in Soil Science, 25 Elsevier, Amsterdam, 21-58

Cook FJ, Rassam DW, Gardner EA and Carlin GD (2002). Drainage from acid sulfate soils in Southeast Queensland C. Lin, MD Melville and LA Sullivan (eds.). Acid sulfate soils in Australia and China, Science Press, Beijing, pp. 218-229

Cook FJ (2002). Chapter 7. The Twin-Ring Method for Measuring Saturated Hydraulic Conductivity and Sorptivity in the Field Soil Physical Measurements and Interpretation for Land Evaluation, (Eds NJ McKenzie, KJ Couglan and HP Cresswell), CSIRO Publishing, Australian soil and land survey handbook series Vol. 5., 108-118

Cook FJ (2008). Chapter 80. Near-saturated hydraulic conductivity and sorptivity: Laboratory measurement Soil Sampling and Methods of Analysis. MR Carter and EG Gregorich (Eds.), Canadian Society of Soil Science, Taylor and Francis, LLC, Boca Raton, Fl, 1075-1087

Leyden E, Mosley L, Cook F, Taylor J, Pape S, and Barnett E (2012). Near shore groundwater acidification during a hydrological drought, case study from the Lower Lakes, South Australia 3rd National Acid Sulfate Soil Conference, March 2012, Melbourne, Australia

Carlin GD, Cook FJ, Cropp RA, Hartcher M, Smajgl A , Yu B, and Heckbert B (2007). Using a catchment contour approach for simulation of ground and surface water behaviour within agent based modelling platforms 2nd IWA-ASPIRE 2007 Conference , 28 October - 1 November 2007, Perth, W.A

Su X, Asseng S, Cook F, Campbell P, and Carlin G (2007). Simulating dynamics of an agricultural region by considering the interactions of social-economic and biophysical factors Complex 07

Camkin JK, Bristow KL, Cook F, Paydar Z, Xevi E, and Knight J (2008). Irrigation Mosaics: An attractive pathway to sustainable irrigation in northern Australia or just a new road to the same place? Irrigation Australia Conference, 22 May 2008, Melbourne

Cook FJ, Jordan PJ and Waters D (2009). WaterCAST model for catchment hydrology and water quality – Framework and philosophy Geophysical Research Abstracts, Vol. 11, EGU2009-123-2, 2009, EGU General Assembly 2009

Neumann, LE, Simunek J, Cook, F and Diederik J (2010). Implementation of quadratic upstream interpolation schemes and monotonic maintenance for evaluating reactive solute transport into HYDRUS- 1D and HP1 Soil Sci. Soc. Am., Long Beach, California, 31 October – 4 November 2010 (accepted). (?)

Cook FJ, Knight JH and Kookana R (2010). Average pesticide concentrations in soil and surface runoff as affected by application period, proportional area sprayed and time CESE2010 conference, 26 September-1 October, Cairns, Australia

Rassam D, Cook F and Gardner T (2000). An irrigation trial in an acid sulfate soils cane field CRC Sugar Annual Meeting, Townsville, 12-15 March 2000

Cook F, Carlin G, Orr P, Millar G and MacDonald C (2001). Direct In situ measurement of the oxidation rate of pyrite in acid sulfate soil CRC Sugar Annual Meeting, Townsville, 12-15 March, 2001

Rassam D, Cook F and Gardner T (2001). An irrigation trial in an acid sulfate soils cane field CRC Sugar Annual Meeting, Townsville, 12-15 March 2001

Cook FJ, Carras J, Zegelin SJ and Smiles DE (2002). Salt leaching from mine tailings at Kalgoorlie Australia: Laboratory experiments and numerical modelling Joint meeting Canadian Geophysical Union and Canadian Soil Sci. Soc., Banff, 18-21 May 2002. Abstracts

Cook FJ, Carlin GD, Dobos S and Miller GE (2002). Oxidation rate of pyrite in acid sulfate soils: In situ measurements and modelling 2 5th International Acid sulfate soils conference, Tweed Heads, 26-30 August 2002. Abstracts 36-37

Rigby PA, Dobos SK and Cook FJ (2002). Reaction kinetics of pyrite oxidation in acid sulfate soils in QLD 2 Internal Conference at QUT

Cook FJ, Carlin GD and Fanning DJ (2003). Dissolved sugars in runoff waters Poster paper at Sugar CRC Annual Meeting, Townsville, 11th March 2003

Cook, FJ, Fanning, DJ and Carlin, GD (2003). Dissolved sugars in runoff waters CRC Sugar Annual Meeting, Townsville, March 2003

Cook, FJ, Fanning, DJ and Carlin, GD (2003). Dissolved sugars in runoff waters Burdekin Field Day, 20-21 May 2003

Jayawardane NS, Kirchhof G, Horn R, Blackwell J, Cook F (2003). Soil Slotting to ameliorate degraded Lands - by removing subsoil limitations to crop production International Soil Tillage Research Organisation, 16th Triennial Conference: Soil Management for Sustainability 13-18 July 2003, The University of Queensland – Brisbane, ,Australia.. Poster

Carlin GD and Cook FJ (2004). Remote Portable Water Quality Monitoring on a Budget 12th National Hydrographers Conference, Gold Coast, June 2004

Cook FJ, Paydar Z, Xevi E, Bristow KL and Pethram C (2006). Can irrigation mosaics deliver better outcomes than traditional irrigation? In Proceedings ANCID National Conference and Exhibition, Darwin, 15-18 October 2006, p88

Bristow KL, Petheram C, Cook FJ, Lawrie K, Fitzgerald A and Clarke J (2006). Understanding the irrigation – groundwater link: It’s about water quality, not just quantity In Proceedings ANCID National Conference and Exhibition, Darwin, 15-18 October 2006, p73

Cook F, Xevi E, Knight J, Paydar Z and Bristow K (2007). Advantages and disadvantages of irrigation mosaics as an alternative to traditional forms of irrigation in northern Australia Abstracts. River Symposium 2007

Cook FJ and Jayawardane NS (1992). Soil aeration, penetration resistance and water content: A simple model In Abstracts of Poster Presentations, National Soils Conference, Adelaide, 19-23 April 1992. pp.68

Geeves G, Murphy B, Felwin T and Cook F (1992). Calculation of hydraulic conductivity near saturation using disc permeameter data for soils in the south eastern wheatbelt In Abstracts of Poster Presentations, National Soils Conference, Adelaide, 19-23 April 1992. pp.39

Topp GC, Cook FJ and Galganov YT (1993). Non-limiting water range (NLWR) in soil: An evaluation of the concept In Proceedings of American Soil Science Society Conference, Cincinnati, Nov, 1993

Cook FJ, Jayawardane NS, Blackwell J and Nicoll G (1996). Comparison of hydraulic conductivity measured at different scales In Australian and New Zealand National Soils Conference, University of Melbourne, 1-4 July 1996. Vol. 3, Poster Papers: 47-48

Jayawardane NS, Blackwell J, Nicoll G and Cook FJ (1996). Evaluation of the FILTER technique for land treatment of sewage effluent In Australian and New Zealand National Soils Conference, University of Melbourne, 1-4 July 1996. Vol.2, Oral Papers: 135-136

Cook FJ and Knight JH (1996). Comparison of hydraulic conductivity measured at different scales In Australian and New Zealand National Soils Conference, University of Melbourne, 1-4 July 1996. Vol.3, Poster Papers: 47-48

Cook FJ and Gardner E (1998). Water management and drainage of acid sulfate soils In Canegrowers Environment Forum, Acid Sulfate Soils Workshop, Proceedings. Mackay, 24-25 March, 1998. Paper 5. 6p

Gardner T, Morton D, Matthews P, Sands J, Cook FJ, Jayawardane NS and Blackwell J (1998). F.I.L.T.E.R. comes to Queensland AWWA Regional Weekend Conference, Gold Coast, Queensland, November, 1998

Bristow KL, Thorburn PJ, Cook FJ and Kluitenberg GJ (1999). Water and nutrient management in drip irrigation systems ASA-SSSA National Conference, 31 October – 4 November 1999, Salt Lake City, Utah, USA. Agron. Abstr. 91: 15

Cook FJ, Gardner EA, Carlin G and Rassam D (1999). Production and export of acidity from acid sulfate soils CRC Sugar Annual Meeting, Townsville, 23-25 February 1999

Mallawaarachchi T, Qureshi E, Grundy M, Cook F, Rayment G, Beattie R, Bohl H, Hunt R, Kingston G and Nelson P (2000). Managing economic Environmental Trade-offs in the sugar industry: Maximising net farm income under environmental compliance CRC Review Meeting, Mercure Inn, Townsville, 6-8 March 2001

Rassam D, Cook F and Gardner E (1999). How numerical models can help manage acid sulphate soils Poster paper at CRC for Sustainable Sugar Production Meeting Townsville, 23-25 February 1999

Topp E, Cook FJ and Topp GC (2000). Heating canola oil with fresh vegetable inclusions: Modelling and measurement of heating pattern Poster presented July 17 to Agri-Food 2000 Conf. Abstract In Proc. Agri- Food 2000, Winnipeg, MB, Canada, p. 76

Rassam D, Cook F and Gardner E (2000). Managing acid sulfate soils with the aid of numerical modeling Posters 2000, CRC Sugar Ocassional Publication, June 2000

Cook FJ, Rohde KW and Silburn DM (2011). Pesticide transport in runoff comparison with convolution model for Mackay Whitsunday region American Geophysical Union, Fall Meeting 2011, abstract #H53H-1515.

Cook FJ and Watt JPC (1977). In situ studies of the hydraulic behaviour of four recent soils of the Heretaunga Plains (Hawkes Bay) (Abstract) in Summaries of Presented Papers, 25th Jubilee Conference, New Zealand Society of Soil Science, December 5-9, 1977, Flock House, Bulls. 1977. pp. 56-57

Cook FJ (1979). Numerical simulation of drainage in soils In New Zealand Hydrological Society Annual Symposium, 27-30 November 1979, Napier. Summaries of Papers. (Comps. J. Watt, J. Blades). New Zealand Hydrological Society, 1979. pp. 96-97

Cook FJ (1982). The effect of variability in soil hydraulic properties on estimation of the depth and radius of wet soil under a trickle irrigation emitter New Zealand Soil News, 30 (5):132-134

Cook FJ, Parfitt R, Roberts A and Thomson N (1982). Soil water and pasture growth on two friable soils In Proceedings, Soil and Plant Water Symposium, Flock House, Bulls, 1982. 1 p

Watt JPC, Griffiths E and Cook FJ (1982). Towards an hydraulic characterisation of NZ soils: Soil Bureau's Soil Water Assessment and Measurement Programme, 'SWAMP' In Proceedings, Soil and Plant Water Symposium, Flock House, Bulls, 1982. 20 p

Watt JPC, Griffiths E and Cook FJ (1982). Soil Water Assessment and Measurement Programme, 'SWAMP' In Proceeding of 28th N.Z. Soil Bureau Conference, 21-24 June 1982, N.Z. Soil Bureau, Department of Scientific and Industrial Research, 83-91

Cook FJ and Orchard Valerie A (1984). Relationship between microbial activity, soil water and substrate depletion (Abstract) In Proceedings, Australian Society of Soil Science, National Soils Conference, Brisbane, Australia, 13-18 May 1984. Australian Society of Soil Science, 1984 p. 394

Orchard Valerie A and Cook FJ (1984). Relationships between soil respiration and soil moisture In Proceedings, Australian Society of Soil Science, National Soils Conference, Brisbane, Australia, 13-18 May 1984. Australian Society of Soil Science, 1984, p. 394

Cook FJ and Orchard VA (1985). Soil water and microbial activity In New Zealand Institute of Agricultural Science Convention, Water 85, Abstracts, Lincoln College, Canterbury, 2-6 September 1985. P S30

Watt JPC, Beecroft FG, Griffiths E, Cook FJ and Joe EN (1986). Soil-water land-use relationships: a statement of the hydraulic character of two soils in central Otago, and some interpretations for orchard management In Proceedings of the New Zealand Irrigation Conference, Alexandra, 8-10 April 1986. pp. 213-235

Cook FJ, Jayawardane NS and Blackwell J (1987). Effects of gypsum slots on soil hydraulic properties In Poster Abstracts, Flow and Transport in the Natural Environment: Advances and Applications, Aug. 31 - Sep. 4 1987, Aust. Academy of Sci. Canberra, S14

Cook FJ, Jayawardane NS and Blackwell J (1988). Infiltration into duplex soils containing gypsum slots (Abstract) P. 221 In National Soils Conference, Canberra, Australia, 9-12 May 1988. Abstracts. (abstract?) Australian Society of Soil Science, 1988. 276 p

Doble RC, Smerdon BD, Petters L, Cook F and Crosbie RS. (2012). Groundwater recharge from over bank floods Water Resources Research, 48:W09522.

Thomas S, Waterland H, Dann R, Close M, Francis G and Cook F (2012). Nitrous oxide dynamics in a deep soil-alluvial gravel vadose zone following nitrate leaching Soil Sci. Soc. Am., 76(4): 1333-1346.

McJannet DL, Cook FJ, McGloin RP, McGowan HA, Burn S and Sherman, B (2013). Long-term energy flux measurements over an irrigated water storage using scintillometry Agric. Forest Meteorology, 168:93-107.

McJannet DL, Cook FJ and Burn S (2012). The water balance of an irrigated water storage in South-East Queensland, Australia Water Resources Research (Accepted)

Cook FJ, Knight JH, Doble RC and Raine SR (2012). An improved solution for the infiltration-advance problem in irrigation hydraulics Irr. Sci., (In Press DOI 10.1007/s00271-012-0392-7).

Moynao FE, Vasilyeva N, Bouckaert L, Cook F, Craine J, Curiel Yuste J, Don A, Epron D, Formanek P, Franzluebbers A, ilstedt U, Katter T, Orchard V, Riechstein M, Rey A, Ruamps L, Subke J-A Thomsen IK, and Cheu C. (2012). The moisture response of soil heterotrophic respiration: interaction with soil properties. Biogeosciences Discussions, 9: 1173-1182.

Cook FJ (2010). Transport in Porous Media

Paydar Z, Cook F, Xevi E and Bristow K (2011). An overview of irrigation Irrigation and Drainage Journal, 60(4): 454-463.

Cook FJ, Knight JH, Silburn DM, Kookana RS and Thorburn PJ (2013). Upscaling from paddocks to catchments of pesticide mass and concentration in runoff Agriculture Environment and Ecosystems, doi:10.1016/j.agee.2011.08.009

McJannet DL, Webster IT and Cook FJ (2012). An area-dependent wind function for estimating open water evaporation using land-based meteorological data. Environmental Modelling and Software, 31: 76-83.

Kelliher FM, Condron LM, Cook FJ and Black A (2011). Sixty years of seasonal irrigation affects carbon storage in soils beneath pasture grazed by sheep Agriculture Environment and Ecosystems

Paydar, Z., Cook, F., Xevi, E. and Bristow, K (2011). An overview of irrigation mosaics Irrigation and Drainage Journal (In press)

Cook FJ (2010). Comments on ‘gas permeability of fractured sandstone/coal samples under variable confining pressure’ Transport in Porous Media 83:333-347, 2010. Transport in Porous Media

McJannet DL, Cook FJ, McGloin RP, McGowan HA and Burn S (2011). Estimation of evaporation and sensible heat flux from open water using a large aperture scintillometer Water Resources Research, 47: DOI: 10.1029/2010WR010155

Neumann LE, Simunek, J and Cook, FJ (2010). Implementation of quadratic upstream interpolation schemes for solute transport into HYDRUS-1D Environmental Modelling and Software, 26(11): 1298- 1308

Cook FJ and Rimmer A (2010). Erratum: Chemical stratification in thermally stratified lakes: A chloride mass balance model Limnology and Oceanography, 55(3):1463-1465

Cook FJ, Knight JH and Wooding RA (2009). Steady groundwater flow to drains on a sloping bed: Comparison of solutions based on Boussineq sequation and Richards equation Transport in Porous Media, 77(2):357-372

Camkin JK, Bristow KL, Pethram C, Paydar Z, Cook FJ, and Story J (2008). Mass mixing approach for assessing effects of irrigation on water quality WIT Transactions on Ecology and the Environment, 1:289- 291

Camkin JK, Bristow KL, Pethram C, Paydar Z, Cook FJ and Story J (2008). Designs for the future : the role of sustainable irrigation in northern Australia Sustainable Irrigation Management, Technologies and Policies II, WIT Transactions on Ecology and the Environment, Vol. 112:293-302

Thorburn PJ, Cook FJ, Bristow KL and Fitch P (2008). Improving trickle irrigation: Better matching trickle systems design to soils Acta Horticulturae, 792: 669-677

Cook FJ and Orchard VA (2008). Relationships between soil respiration and soil moisture Soil Biology and Biochemistry, 40:1013-1018

Raine SR, Meyer WS, Rassam DW, Hutson JL and Cook FJ (2007). Soil-water and solute movement under precision irrigation: knowledge gaps for managing sustainable root zones Irrigation Sci., 26:91-100

Bristow KL, Cote CM, Hopmans JW, Charlesworth PB, Cook FJ and Thorburn PJ (2006). Improving solute (salt, nutrient, chemical) management to minimise the environmental impacts of irrigation International Water and Irrigation, 23(1):34-37

Rigby PA, Dobos S, Cook FJ and Goonetilleke A (2006). The role of organic matter in framboidal pyrite oxidation The Sci. Total Environ., 367:847-854

Cook FJ, Fitch P, Thorburn PJ and Bristow KL (2006). WetUp: A software tool to estimate wetting patterns from drip emitters for better irrigation design Irrisoft http://www.irrisoft.org/irrisoft/sdp/wetup

Cook FJ, Knight JH and Kelliher FM (2006). Oxygen transport in soil and vertical root distribution Aust J Soil Res., 45:101-110

Cook FJ, Kelliher, FM (2006). Determining vertical root and microbial biomass distributions from soil samples Soil Sci. Soc. Am. J., 70:728-735

Matthews CJ, Cook FJ, Braddock RD and Knight JH (2004). Comparing two new transformations for the water content form of Richards’ Equation Aust J Soil Res., 43:945-955

Cook FJ, Fitch P, Thorburn PJ, Charlesworth PB and Bristow KL (2003). Modelling trickle irrigation: Comparison of analytical and numerical models for estimation of wetting front position with time Environmental Modelling and Software, 21:1353-1359

Cook FJ, Dobos SK, Carlin GD and Millar GE (2004). Oxidation Rate of Pyrite in Acid Sulfate Soils: In Situ Measurements and Modelling Aust J. Soil Res., 42:499-507

Cook FJ, Thorburn PJ, Bristow KL, and Cote CM (2003). Infiltration from surface and buried point sources: The Average wetting water content Water Resour. Res., 39: 1364, doi:10.1029/2003WR002554, 2003

Cook FJ, Thorburn PJ, Fitch P and Bristow KL (2003). WetUp: a software tool to display approximate wetting patterns from drippers Irr. Sci., 22:129-134

Thorburn PJ, Cook FJ and Bristow KL (2003). Soil-dependent wetting from trickle emitters: implications for system design and management Irr. Sci., 22:121-127

Jayawardane NS, Biswas TK, Blackwell J and Cook FJ (2004). A review of the FILTER technique for treatment and reuse of sewage effluent and other wastewater Urban waste management in Australasia- Pacific region. Science Publishing Inc. Enfield, New Hampshire, USA, pp 249-275

Cote CM, Bristow KL, Charlesworth PB, Cook FJ and Thorburn PJ (2003). Analysis of soil wetting and solute transport in subsurface trickle irrigation Irr. Sci., 22:143-156

Topp EB, Cook FJ and Topp GC (2003). Heating oils with fresh vegetable inclusions: Modelling and measurement of heating pattern Food Res. International 36:831-842

Cook FJ and Knight JH (2003). Oxygen transport to plant roots: Modelling for physical understanding of soil aeration Soil Science Society of America Journal, 67:20-31

Bristow KL, Cote CM, Hopmans JW, Charlesworth PB, Cook FJ and Thorburn PJ (2003). Improving solute (salt, nutrient, chemical) management to minimise environmental impacts of irrigation International Water and Irrigation, 23(1): 34-37

Rassam DW and Cook FJ (2002). Predicting the shear strength envelope of unsaturated soils Geotechical Testing Journal, 25:215-220

Cook FJ and Rassam DW (2002). An analytical model for water table dynamics during drainage and evaporation Journal of Hydrology, 263:105-113

Rassam DW and Cook FJ (2002). Numerical simulations of water and solute transport applied to drained acid sulphate soils Journal of Irrigation and Drainage Engineering, ASCE, 128:100-106

Rassam DW, Cook FJ and Gardner EA (2002). Field and laboratory studies of drained acid sulphate soils Irrigation and Drainage Engineering, ASCE, 128:107-115

Jayawardane NS, Biswas TK, Blackwell J and Cook FJ (2001). Management of salinity and sodicity in a land FILTER system, for treating saline wastewater on a saline-sodic soil Aust.J Soil Res., 39:1247-1258

Thomas SM, Cook FJ and Whithead D (2000). Seasonal soil surface carbon fluxes from the root systems of young Pinus radiata trees growing at ambient and elevated CO2 concentration Global Change Biology, 6:1-14

Cook FJ, Hicks W, Gardner EA, Carlin GD and Froggatt DW (2000). Export of acidity in drainage water from acid sulfate soils Marine Pollution Bulletin, 41:319-326

Topp GC, Dow B, Edwards M, Gregorich EG, Curnoe WE and Cook FJ (2000). Tillage practices and oxygen supply in corn rooting zones Can. J. Soil Sci., 80:33-41

Thomas SM, Whitehead D, Reid JB, Cook FJ, Adam JA and Leckie AC (1999). Production, loss and vertical distribution of Pinus radiata fine roots growing at ambient and elevated CO2 concentration Global Change Biology, 5:107-121

Cook FJ (1999). Comments on infiltration models for the disk infiltrometer Soil Sci. Soc. Am. J., 63:1032- 1033

Stirzaker RJ, Cook FJ and Knight JH (1999). Where to plant trees on cropping land for control of dryland salinity: some approximate solutions Agricultural Water Management, 39:115-133

Cook FJ, Thomas SM, Kelliher FM and Whitehead D (1997). A model of one-dimensional steady-state carbon dioxide diffusion from soil Ecological Modelling, 109:155-164

Smith CJ, Hopmans P and Cook FJ (1996). Accumulation of Cr, Pb, Cu, Ni, Zn and Cd in soil following irrigation with treated urban effluent in Australia Environmental Pollution, 94: 317-323

Cook FJ (1995). One-dimensional oxygen diffusion into soil with exponential respiration: analytical and numerical solutions Ecological Modelling, 78:277-283

Cook FJ, Kelliher FM and McMahon SD (1994). Changes in infiltration and drainage during wastewater irrigation of a highly permeable soil J. Environ. Qual., 23:476-482

Cook FJ (1994). Effects of gypsum slotting on the hydraulic properties of a red-brown earth Soil and Tillage Res., 28:239-252

Cook FJ and Broeren A (1994). Six methods for determining sorptivity and hydraulic conductivity with disc permeameters Soil Sci., 157:2-11

Orchard VA, Cook FJ and Corderoy DM (1992). Field and laboratory studies on the relationships between respiration and moisture for two soils of contrasting fertility status Pedobio, 36:21-33

Cook FJ (1991). Calculation of hydraulic conductivity from suction permeameter measurements Soil Sci., 152:321-325

Prathapar SA, Meyer WS and Cook FJ (1989). Effects of cultivation on the relationship between root length density and unsaturated hydraulic conductivity Aust. J. Soil Res 27:645-650

Cook FJ, Jayawardane NS and Blackwell J (1989). Effects of amelioration on infiltration characteristics of a transitional red-brown earth NZ Journal of Crop and Horticultural Science, 17:183-188

Cook FJ, McQueen DJ and Hart PBS (1986). Physical properties of surface soil in a topsoil removal area and a nearby undisturbed site NZ Journal of Agricultural Research, 29:137-142

Parfitt RL, Roberts AHC, Thomson NA and Cook FJ (1985). Water use, irrigation, and pasture production on Stratford silt loam NZ Journal of Agricultural Research, 28:393-401

Parfitt RL, Joe EN and Cook FJ (1985). Water use and pasture growth on Judgeford silt loam NZ Journal of Agricultural Research, 28:387-392

Cook, FJ, Orchard VA, Corderoy DM (1985). Effects of lime and water content on soil respiration NZ Journal of Agricultural Research, 28:517-523

Orchard VA and Cook FJ (1983). Relationship between soil respiration and soil moisture. Soil Biology and Biochemistry, 15:447-453

Cook FJ (1983). Water distribution over the soil surface and within the soil during sprinkler irrigation. NZ Journal of Experimental Agriculture, 11:69-72

McColl HP, Hart PBS and Cook FJ (1982). Influence of earthworms on some soil chemical and physical properties and the growth of ryegrass on a soil after topsoil stripping - a pot experiment. NZ Journal of Agricultural Research, 25:229-237

Cook FJ and Bartley R (2011). Review of modelling of constituent transport in catchments and comparison of model frameworks in eWater SOURCE. eWater CRC, 29p.

Raven MD, Self PG, Cook FJ and Trefry MG (2012). Investigation of salt distribution and surface properties of Mt Keith Mine Tailings, TSF1. CSIRO Mining Down Under, National Flagship Report no. EP118280, 72pp.

Cook FJ (2012). Assessment of likely causes for crop losses following irrigation at North Corynnia, NSW, Australia. Freeman Cook and Associates Report, 24p.

Cook FJ and Mosley L (2012). Modelling of acidic solute fluxes from sediments to the water column in the Lower Lakes of South Australia Report, 66p.

Raven MD, Self PG, Cook FJ and Trefry MG (2012). Investigation of salt distribution and surface properties of Mine Tailings, TSF1. CSIRO Mining Down Under, National Flagship Report no. EP121742, 82pp.

Neumann L, Cook FJ (2009). WASOM1 – Water and solute movement in 1 dimension eWater Cooperative Research Centre Technical Report, April, 2009, 32p

Wilkinson S, Cook F, Bartley R, Kinsey-Henderson A, Searle R, Ellis T, Jordon PW and Miller A (2010). Specification for sediment, nutrient and pesticide generation and transport modules in WaterCAST eWater CRC

Cook FJ (2011). Lake Alexandrina and Lake Albert: Analysis of groundwater measurements and estimation of acid fluxes CSIRO: Water for a Healthy Country National Research Flagship. 62 pp

Jayawardane N, Blackwell J, Christen E, Khan S, Cook F, Zhanyi G, Xianjun C, Guoxia M and Jinkai Z (2007). Guidelines for land-filter and catchment-filter techniques to reuse waterwater in China CSIRO Land and Water Report, 79/07, 56p

Post DA, Waterhouse J, Grundy M and Cook F (2007). The past, present and future of sediment and nutrient modeling in GBR catchments. Outcomes of a workshop held 1-2- November 2006 at the Hotel Grand Chancellor, Brisbane CSIRO, Water for a Healthy Country National Research Flagship, June 2007, 50p

Cook FJ, Knight JH, Humphreys E, Tisdall J, McHugh J and Hamilton G (2007). Modelling water and solute processes and scenarios for optimisation of permanent raised bed systems in China, India, Pakistan and Indonesia ACIAR Report LWR-2005-059, 108p

Paydar Z, Cook FJ, Xevi E, Petheram C and Bristow KL (2007). Review of the current understanding of irrigation mosaics CSIRO land and Water Technical Report No 40/07, 38pp

Cook FJ, Xevi, E, Knight JH, Paydar Z and Bristow KL (2008). Analysis of biophysical processes with regard to advantages and disadvantages of irrigation mosaics CSIRO Land and Water Science Report No. 14/08, CRC for Irrigation Futures Technical Report No. 07/08. 68 pp

Cook FJ, Carlin GD, Hartcher MG, Su X, Asseng S and Campbell P (2008). A water balance model for agent based modeling CSIRO Land and Water Science Report, 47/08, 20p

Cook FJ, Xevi E, Knight JH, Paydar Z and Bristow KL (2008). Analysis of biophysical processes with regard to advantages and disadvantages of irrigation mosaics 2 CSIRO Land and Water Science Report No. 14/08, CRC for Irrigation Futures Technical Report No. 07/08. 68 pp

Tisdall J, Rector MM, Kusnarta IGM, Mahrup, Sukartono, Halil, Husni, Pengkajian J, Mckenzie B, Borrell A, van Cooten D, McHugh J, Abawi Y, Cook F, Perin R (2008). Improved soil management of rainfed vertisols in southern Lombok ACIAR Report SMCN-199-005, 96p

McJannet D, Cook F, Hartcher M and Burn S (2008). Maximising water storage in south east Queensland reservoirs: evaluating the impact of runoff interception by farm dams Urban Water Security Alliance Technical Report 5

McJannet D, Cook F and Burn S (2008). Evaporation reduction by manipulation of surface area to volume ratios: overview, analysis and effectiveness Urban Water Security Alliance Technical Report 6

McJannet D, Cook F, Hartcher M and Burn S (2008). Maximising water storage in south east Queensland reservoirs: evaluating the impact of runoff interception by farm dams Urban Water Security Alliance Technical Report 7

McJannet D, Cook F, Knight J and Burn S (2008). Evaporation reduction by monolayers: overview, modelling and effectiveness Urban Water Security Alliance Technical Report 8

Webster IT, Cook, FJ and Hicks WS (2008). Appendix C. Review of Hipsey and Salmon: Numerical Assessment of Acid-Sulfate Soil Impact on the River Murray Lower Lakes During Water Level Decline Peer Review of Acidification Thresholds for Lake Alexandrina and Lake Albert, Aquaterra (2008), 38-50

Cook FJ (2009). Tugun bypass acid sulfate soil bore analysis report CSIRO Land and Water Scientific Report 27/09. (Restricted access)

Cook FJ and Kinsey-Henderson A (2005). Estimates of average hydraulic drivers for sediment and nutrient fluxes in the GBR catchment from SedNet CSIRO Land and Water Technical Report No. 15/05, 28p

Carlin GD and Cook FJ (2006). Remote Portable Water Quality Monitoring on a Budget CSIRO Technical Report

Cook FJ, Fitch P, Thorburn PJ and Bristow KL (2006). WetUp: A calculator (or software tool) to approximate wetting patterns form drippers http//:www.irrisoft.org

Cook FJ, Carlin GD, Zandonna R et. al. (2006). Report on soil monitoring of physical properties at Yanggao County, Shanxi, Peoples Republic of China CSIRO Land and Water Technical Report

Cook FJ, Jayawardane NS et. al. (2006). Modelling of water and solute transport at Yanggao County, Shanxi, Peoples Republic of China CSIRO Land and Water Technical Report

Cook FJ, Jayawardane NS, Rassam DW, Christen EW, Hornbuckle JW, Stirzaker RJ and Bristow KL (2006). The state of measuring, diagnosing, ameliorating and managing solute effects in irrigated systems CRC for Irrigation Futures Technical Report, No. 04/06, October 2006

Gardner EA, Rayment GE, Cook FJ, Powell B, Watling KM and Hey KM (2002). Acid sulfate soils, their distribution, behaviour and management as related to sugar cane production CRC Sugar Environmental Short Course Notes, (ed R Bruce), CRC Sugar

Cook FJ (2003). Prediction and management of acidity production and export from ASS used for sugar production (Activity 1.3.5) Final report on Activity 1.3.5 for CRC Sugar. 10p. Cook FJ (Complier) 2003

Cook FJ (2003). Understanding causal factors of oxygen depletion in waterways of cane growing regions Final report on Activity 1.3.9 for CRC Sugar. 10p. Cook FJ (Complier) 2003

Dawes L, Sweeney C, Cook F, Bristow K, Eldridge S, Biggs J and Thorburn P (2003). Soil hydraulic properties of the Fairymead soils, Bundaberg CRC Technical Publication, CRC for Sustainable Sugar Production, Townsville. 24p

Cook FJ, Pankhurst CE, Bohl HP, D’Amato C, Fanning D, Rayment GE and Carlin GD (2003). Fate of split sugars from cane harvesting: Investigation and modeling of the phenomena CSIRO Technical Report 48/03, September 2003. 28p

Cook FJ, Orr PT. MacDonald C, Tan Y (2004). In situ sample and storage of soil gases CSIRO Land and Water Technical Report 2/04, March 2004

Hutchinson P, Knight J, Cook F and Murray W (2005). Soil water potential and salinity system CSIRO Land and Water, Client Report, June 2005, 55p

Raine SR, Meyer WS, Rassam DW, Hutson JL and Cook FJ (2005). Soil-water and salt movement associated with precision irrigation – Research Investment Opportunities CRC Irrigation Futures Technical Report, 3.13/1 March 2005

Cook FJ and Carlin GD (2005). Human/Landscape Interactions Task: Report on Task Activities and Outcomes CSIRO Land and Water, Client Report. 11p

Cook F, Gardner E and Rassam D (1999). Prediction and management of acidity production and export from acid suphate soils used for sugar production SRDC Milestone Report No. 5, June 1999

Cook F, Gardner E and Rassam D (1999). Prediction and management of acidity production and export from acid suphate soils used for sugar production SRDC Milestone Report No. 6, December 1999

Jayawardane NS, Biswas TK, Blackwell J and Cook FJ (1999). The research project on land treatment of effluent from the Griffith City Council sewage work - Report 9. Planning, installation and operation of the Pilot FILTER trial, during the period June 1998 to December 1998 Report prepared for GCC and ACIAR. Consultancy Report No. 99-55

Gardner EA, Rayment GE and Cook FJ (1999). Distribution, behaviour and management of acid sulphate soils Environmental Short Course for Sustainable Sugar Production - Course Manual. Eds Bruce RC, Johnston M and Rayment GE. CRC for Sustainable Sugar Production, Townsville

Cook F, Gardner E and Rassam D (2000). Prediction and management of acidity production and export from acid suphate soils used for sugar production SRDC Milestone report No. 7, June 2000

Cook, F, Gardner, E and Rassam, D (2000). Prediction and management of acidity production and export from acid suphate soils used for sugar production SRDC Milestone report No. 8, December 2000

Gao Zhanyi, Tapas Biswas, Song Yuxiang, Cheng Xianjun, Fu Mei, Li Dongsheng, Yao Huilan, Nihal Jayawardane, Freeman Cook and John Blackwell (2000). Planning, installation and operation of the FILTER trial in Wuqing, China CSIRO Land and Water Client Report to ACIAR project LWR1/96/190

Zegelin SJ, Carras JN, Cook FJ, Riley K and Smiles DE (2001). The transport of near surface salts in hypersaline gold tailings and the implications for dust generation by wind action CSIRO Land and Water. Investigation Report ET/LR 350R. Report to the Minerals and Energy Research Institute of WA. Pp 67

Cook, Freeman and Gardner Ted (2001). Prediction and management of acidity production and export from acid sulphate soils used for sugar production Final Report SRDC Project DNR 004, June 2001. 20p + appendices

Cook FJ (2001). Vertical and horizontal components of flow on a sloping bed with evaporation CSIRO Land and Water, Consultancy Report. 7p

Jayawardane NS, Biswas TK, Blackwell J and Cook FJ (2002). The research project on land treatment of effluent from the Griffith City Council sewage work - Report 10. Final report on pollutant removal and hydraulic flows in Pilot FILTER trial, during the period June 1998 to June 2002 Consultancy report prepared for GCC and ACIAR

Cook FJ, Lush A, Carlin GD and Bott K (2002). A novel method of Controlling Acid Discharge In Drainage Water using Lime Slots Final Report, Australia’s Oceans Policy Coastal Acid Sulfate Soils Program (CASSP), CSIRO Land and Water Technical Report 45/03, December 2002, 25p

Carlin GD, Truong P, Cook FJ, Thomas E, Mischke L, Mischke K (2003). Vetiver Grass Hedges for Control of Runoff and Drain Stabilisation, Pimpama, Queensland Final Technical Report, Australia’s Oceans Policy Coastal Acid Sulfate Soils Program (CASSP), CSIRO Technical Report 46/03, February 2003, 20p

Cook FJ (1990). Some physical properties of New Zealand soils. In An introduction to Soil Physics and Hydrology Land Treatment Collective Technical Review, 2:105-118

Fenton JA, Squires PJ and Cook FJ (1990). System monitoring. In An introduction to Soil Physics and Hydrology Land Treatment Collective Technical Review, 2:99-104

Cook FJ, Thorn AJ, Lilley GP, Hayes MJ and Ward RD (1991). Soil hydraulic investigations in Whakarewarewa forest DSIR Land Resources Technical Report

Cook FJ and Smith CJ (1994). An investigation of the environmental consequences of irrigation with reclaimed water: RMC Duntroon CSIRO Centre for Environmental Mechanics Technical Report, No. 64. 42p

Tan Y, Smith CJ, McKenzie N and Cook FJ (1995). Reclaimed water re-use project, Southwell Park Preliminary Report. ACTEW

Cook FJ and Leunig R (1996). Measuring the Hydraulic Conductivity of Concrete CSIRO Centre for Environmental Mechanics, Report, 13p

Cook FJ and Mackenzie DH (1996). Soil hydraulic conductivity measurement Workshop Notes, Field Measurement Techniques In Hydrology. Corpus Christi College, Clayton VIC, 1-4 April 1996. CRC For Catchment Hydrology. D1-D23

Jayawardane NS, Blackwell J, Cook FJ, Nicoll G and Wallett DJ (1997). The research project on land treatment of effluent from the Griffith City Council sewage work - Report 7 Final report on pollutant removal by the FILTER system, during the period from November 1994 to November 1996 for GCC, DLWC and DPIE. CSIRO, Division of Water Resources -Consultancy Report No. 97-40

Jayawardane NS, Cook FJ, Ticehurst J, Blackwell J, Nicoll G and Wallett DJ (1997). The research project on land treatment of effluent from the Griffith City Council sewage work - Report 8 Final report on the hydraulic properties of the FILTER system, during the period from November 1994 to November 1996 for GCC, DLWC and DPIE. CSIRO, Division of Water Resources -Consultancy Report No. 97-42

Kirby JM, Pierret A, Moran CJ, Cresswell HP, Cook FJ, Knight JH and Pankhurst C (1998). GRDC Project CSO180, subprogram 3.5, Final report: Hydraulic properties of subsoils: fundamental properties, and the role of biopores. Report to Grains Research and Development Corporation CSIRO Land and Water Consultancy Report, 98-58

Cook FJ (1998). Waterlogging: An issue for cane production CRC for Sustainable Sugar Production meeting on Soil Measurements, 6-7 August 1998, p11-12

Gardner E and Cook F (1998). Prediction and management of acidity production and export from acid suphate soils used for sugar production SRDC Milestone Report No. 1, February 1998

Gardner E and Cook F (1998). Prediction and management of acidity production and export from acid suphate soils used for sugar production SRDC Milestone Report No. 2, May 1998

Cook F and Gardner E (1998). Prediction and management of acidity production and export from acid suphate soils used for sugar production SRDC Milestone Report No. 3-4, December 1998

Aldridge R, Cook FJ and Watt JPC (1981). Pencil tensiometers: Techniques and methods for construction, installation and operation NZ Soil Bureau Scientific Report, 49. 13 p

Cook FJ (1982). Estimation of the radius and depth of wet soil under a trickle irrigation emitter NZ Soil Bureau District Office Report, HV-6. 8 p

Cook FJ and Watt JPC (1982). Evaluation of a transient drainage method for measuring movement of water in soils in field situations NZ Soil Bureau Scientific Report, 57. 87 p

Aldridge R and Cook FJ (1983). Estimation of soil temperature at 0.1m and 0.3m depths NZ Soil Bureau Scientific Report, 62. 18 p

Cook FJ and Thomas RF - Compilers (1984). Hydraulic, physical and chemical properties of three Taranaki soils NZ Soil Bureau Laboratory Report, EP 11. 6p

Cook FJ (1990). Comparison of 1-dimensional models for prediction of water transport in soils DSIR, Land Resources Technical Report, 12. 36p

Cook FJ, Beecroft FG, Joe EN, Balks MR, (1986). Flow of water in a gravelly sandy loam soil from a point source NZ Soil Bureau Contract Report 86/06

Cook FJ (1986). Land disposal of effluent of Rotorua NZ Soil Bureau Contract Report 86/09e

Cook FJ, Hart PBS, Milne JDG, Joe EN, Kings, JA and Lilley GP (1987). Effluent disposal by irrigation at Waingawa Freezing Works NZ Soil Bureau Contract Report 87/05a

Cook FJ (1988). Design criteria for droplet irrigation of effluent in Waingawa Freezing Works NZ Soil Bureau Contract Report 88/13

Hayes M, McQueen DJ and Cook FJ (1990). Drying of Soils: Times to reach equilibrium for standard oven drying and air drying Div. Land and Soil Sciences Tech. Record, LH15, DSIR, New Zealand. 8p

Cook FJ (1990). An introduction to some soil physics concepts in relation to effluent treatment of land. In An introduction to Soil Physics and Hydrology Land Treatment Collective Technical Review, 2:5-30

Cook FJ (1990). Methods of field measurement of water movement into and through soil. In An introduction to Soil Physics and Hydrology Land Treatment Collective Technical Review, 2:53-90

Speir TW, Cook FJ and Thorn AJ (1990). Monitoring - from a soil perspective Proceedings of the Technical and Business Sessions of The Land Treatment Collective, 11-12 October 1990. pp.16-25

Cook Freeman (1996). Video on ‘Soil Permeability Measurement’. Workshop on Field Measurement Techniques in Hydrology CRC for Catchment Hydrology. Shot April 1996

Cook Freeman (1996). Video on ‘Acid sulfate soils’ CRC for Sustainable Sugar Production, shot 25 March 1999

Cook Freeman (1999). Video on ‘Acid sulfate soils’ Out of The Blue Ocean Earth Films, shot Byron Bay 21 September 1999

McJannet D, Cook F, McGloin R, McGowan H, and Burn S (2011). Measurements of evaporation from open water using scintillometry EGU General Assembly 2011, 3 April 2011.(Geophysical Research Abstracts, Vol. 13 EGU2011-1351.

McGloin R, McGowan H, McJannet D, Cook F and Burn S (2011). Quantification of evaporation from a small water storage reservoir: an inter-comparison of the scintillometry and Eddy Covariance methods EGU General Assembly 2011, 3-8 April 2011, Vienna: EGU2011-3953.

Jayawardane NS, Gao Z, Blackwell J, Christen EW, Khan S, Cheng X, Cook F, Biswas T, Zhang J and Meng M (2006). The potential use of FILTER technology for treatment and reuse of wastewater in China 19th ICID Congress, Beijing, China. September14, 2005. In the proceedings of a workshop on “Agricultural water management in China”. Eds: IR Willett and Zhanyi Gao. ACIAR proceedings No. 123, 142-152

Carlin GD, Cook FJ, Cropp RA, Hartcher M, Smajgl A, Yu B and Heckbert S (2007). Using a catchment contour approach for simulation of ground and surface water behaviour within agent based modelling platforms In Oxley L and Kulasiri D (eds). MODSIM 2007 International Congress on Modelling and Simulation. Modelling and Simulation Society of Australia and New Zealand, December 2007, pp. 60-66

Cook FJ, Paydar Z, Xevi E, Bristow KL and Knight JH (2007). Scaling effects in elliptical patches with marginal effects In Oxley L and Kulasiri D (eds). MODSIM 2007 International Congress on Modelling and Simulation. Modelling and Simulation Society of Australia and New Zealand, December 2007, pp. 121-127

Paydar Z, Cook FJ, Xevi E and Bristow KL (2007). Irrigation mosaics. How are they different? In Oxley L and Kulasiri D (eds). MODSIM 2007 International Congress on Modelling and Simulation. Modelling and Simulation Society of Australia and New Zealand, December 2007, pp. 470-476

Hartcher MG, Carlin GD and Cook FJ (2007). Limitations on storage and computation in the use of high resolution digital elevation models In Oxley L and Kulasiri D (eds). MODSIM 2007 International Congress on Modelling and Simulation. Modelling and Simulation Society of Australia and New Zealand, December 2007, pp. 713-719

Cook FJ (2007). Comparisons of transient analytical methods for determining hydraulic conductivity using disc permeameters In Oxley L and Kulasiri D (eds). MODSIM 2007 International Congress on Modelling and Simulation. Modelling and Simulation Society of Australia and New Zealand, December 2007, pp. 1212-1218

Cook FJ, Knight JH, Xevi E, Paydar Z and Bristow KL (2007). Application of new solutions for groundwater mounding to irrigation mosaics In Oxley L and Kulasiri D (eds). MODSIM 2007 International Congress on Modelling and Simulation. Modelling and Simulation Society of Australia and New Zealand, December 2007, pp. 1403-1409

Cook FJ, Jordan PW, Waters DK and Rahman JM (2009). WaterCAST – Whole of catchment model an overview In Anderssen RS, Braddock RD and Newham LTH (eds). 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, Cairns, Australia. Modelling and Simulation Society of Australia and New Zealand and International Association for Mathematics and Computers in Simulation: 3492-3499

Cook FJ, Knight JH, Humphreys E, McHugh AD, Tisdall J, Hamilton G and Roth CH (2009). Modelling of water and solutes in permanent raised beds In Anderssen RS, Braddock RD and Newham LTH (eds). 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, Cairns, Australia. Modelling and Simulation Society of Australia and New Zealand and International Association for Mathematics and Computers in Simulation.: 505-511

Neumann LN, Cook F, Western AW and Verburg K (2009). A one dimensional solute transport model for hydrological response units In Anderssen RS, Braddock RD and Newham LTH (eds). 18th World IMACS Congress and MODSIM09 International Congress on Modelling and Simulation, Cairns, Australia. Modelling and Simulation Society of Australia and New Zealand and International Association for Mathematics and Computers in Simulation.: 3528-3534

Knight JH and Cook FJ (2010). Analytical Solution for Drainage from a Uniformly Wetted Deep Soil Profile 19th World Congress of Soil Science, Soil Solutions for a Changing World 1 – 6 August 2010, Brisbane, Australia. 9 -12. Published on DVD

Warnecke S., Ahern C, McElnea A, Cook F, Fleige H and Horn R (2010). Acid sulfate soil remediation: Drainage water quality as influenced by tidal forcing 19th World Congress of Soil Science, Soil Solutions for a Changing World 1 – 6 August 2010, Brisbane, Australia. 13 -16. Published on DVD

Cook FJ, Neumann LN, Siriwardena L and Western AW (2011). Does where you plant trees make a difference in hydrologic response? MODSIM11

Cook FJ, Knight JH and Wooding RA (2005). Steady Groundwater Flow To Drains On A Sloping Bed: Comparison of Solutions based on Boussinesq Equation and Richards’ Equation In (?) Zerger A and Argent RM (eds) MODSIM 2005 International Congress on Modelling and Simulation. Modelling and Simulation Society of Australia and New Zealand, December 2005, pp. 2890-2896. ISBN: 0-9758400-2-9

Cook FJ, Su X, Campbell AP, Asseng S, Wardell-Johnson A, Nancarrow B, Rixon AJ, Carlin GD (2005). Uncertainty in modelling human-landscape interactions In Zerger A and Argent RM (eds) MODSIM 2005 International Congress on Modelling and Simulation. Modelling and Simulation Society of Australia and New Zealand, December 2005, pp. 1936-1943. ISBN: 0-9758400-2-9

Matthews CJ, Cook FJ, Knight JH and Braddock RD (2005). Comparing two new transformations for the water content form of Richards’ Equation 2 In Hamza MH (ed.) Proceedings of the 14th IASTED International Conference: Applied Simulation and Modelling, IASTED, Canada

Matthews, CJ, Knight JH, Cook FJ and Braddock RD (2005). Using Analytical Solutions For Homogenous Soils To Assess Numerical Solutions For Layered Soils In Zerger A and Argent RM (eds). MODSIM 2005 International Congress on Modelling and Simulation. Modelling and Simulation Society of Australia and New Zealand, December 2005, pp. 1279-1285. ISBN: 0-9758400-2-9

Matthews, CJ, Knight JH, Braddock RD and Cook FJ (2005). The effect of heat on the diversion length of capillary barriers In Zerger A and Argent RM (eds). MODSIM 2005 International Congress on Modelling and Simulation. Modelling and Simulation Society of Australia and New Zealand, December 2005, pp. 1772-1778. ISBN: 0-9758400-2-9

Su, X.F. Asseng S, Campbell AP, Cook FJ, Schilizzi S, Nancarrow B, Poole M, Carlin G and Brockman P (2005). Incorporating capacities and constraints into a conceptual framework to study farmer and land use change In Zerger A and Argent RM (eds). MODSIM 2005 International Congress on Modelling and Simulation. Modelling and Simulation Society of Australia and New Zealand, December 2005, pp. 156-161. ISBN: 0-9758400-2-9

Topp GC, Lapen DR, Cook FJ, Morrison MJ, and Pillai-McGarry U (2006). Facilitating soil- and plant- water relations through use of TDR TDR 2006, Purdue University, USA, September 2006, paper 39, 22p

Johnston P, Cook FJ and Powell BE (2003). Prediction of acid discharge hazard in a small catchment using the FLASSH model Proceedings of 5th International Acid Sulfate Soils Conference

Rigby PA, Dobos SK and Cook FJ (2003). Reaction kinetics of pyrite oxidation in acid sulfate soils in QLD National Environmental Engineering Conference, Brisbane, May 2003

Cook FJ, Lush A, Carlin GD, Ahern CR, Blackwell J, Mishke L and Mishke K (2002). Lime slots for reducing the acidity of drainage waters from acid sulfate soils 4th Environmental Engineering Conference, 237-242p

Cook FJ, Fitch P, Thorburn PJ, Charlesworth PB, and Bristow KL (2003). Modelling trickle irrigation: Comparison of analytical and numerical models for estimation of wetting front position with time In Proceedings of MODSIM03, Townsville, July 14-17, 2003. 212-217

Truong P, Carlin C, Cook F and Thomas E (2003). Vetiver grass hedges for water quality improvement in acid sulfate soils, Queensland Australia In Proceedings Third International Vetiver Conference and Exhibition, Vetiver and Water, Guangzhou, Peoples Republic of China, October 6-9, 2003. China Agricultural Press, pp 194-205

Matthews CJ, Cook FJ, Knight JH and Braddock RD (2004). Handling the water content discontinuity at the interface between layered soils within a numerical scheme Supersoil 2004: Program and Abstracts for the 3rd Australian New Zealand Soils Conference, University of Sydney, Australia, 5 – 9 December 2004

Su X, Asseng S, Campbell AP, Schilizzi S, Cook F, W-Johnson (wardell-Johnson?)A and Nancarrow B (2005). A Multi-Agent Based Human-landscape Model for an Agricultural Region Joint Conference on Multi Agent Modelling for Environmental Management, Bourg-St Maurice, France 21-25 March 2005

Mallawaarachchi T, Rayment G, Cook F and Grundy M (2001). Externalities in cane production and environmental best practice Paper presented to AARES2001 45th Annual Conference of the Australian Agricultural and Resource Economics Society, Stamford Plaza, Adelaide, 23 - 25 January 2001

Rassam DW, Cook FJ and Gardner EA (2001). A field investigation In Proceedings of the 2nd Australia- New Zealand Conference on Environmental Geotechnics – Geoenvironment 2001, Newcastle, New South Wales, Australia, 28-30 November 2001. 121-126

Rassam DW and Cook FJ (2001). Modelling the transport of SO4- ions in drained acid sulphate soils The International Congress on Modelling and Simulation, December 10-13, Canberra, Australia, Vol. 1:499- 504

Rassam DW, Cook FJ and Gardner E (2001). Acid sulphate soils: Concluding results from a field investigation 2nd Australia-New Zealand Conference on Environmental Geotechnics, November 26-28, Newcastle Australia, 121-126p

Truong P, Carlin G, Cook F and Thomas E (2001). Vetiver system for water quality improvement in acid sulfate soils In Vetiver Network Exhibition, The International Freshwater Conference, Bonn, Germany, 3- 6 December 2001

Cook FJ, Rassam DW, Carlin GD and Gardner EA (2001). Drainage of acid sulfate soils – Experimental results, general and specific principles, and predictions In Managing Our Acid Sulfate Soil Workshop, Noahs Beach Newcastle NSW, 26-27 November 2001. The Australia Geomechanics Soc. And The Centre for Acid Sulfate Soil Research, Southern Cross University. P.15

Bristow KL, Hopmans JW, Cote CM, Charlesworth PB, Thorburn PJ and Cook FJ (2002). Development of improved water and nutrient management strategies Transactions of 17th International Union of Soil Science Congress, Bangkok, 13-21 August 2002. Paper 1022

Carlin G, Cook F, Truong P, Thomas E (2002). Vetiver Grass Hedges for control of runoff and drain stabilisation, Pimpama, Queensland 2 4th Queensland Environmental Engineers Conference, Brisbane, Australia, May 2002

Carlin GD, Truong P, Cook FJ, Thomas E, Mischke L and Mischke K (2002). Vetiver grass hedges for stabilising and sediment filtering in acid sulfate soils In Sustainable Management of Acid Sulphate Soils, 5th International Acid sulfate soils conference, Tweed Heads, 26-30 August, 2002, Poster papers 108-109

Carlin GD and Cook FJ (2002). Effectiveness of multiple point sampling in acid sulfate soils using a peristaltic pump and sensing chamber In Sustainable Management of Acid Sulphate Soils, 5th International Acid sulfate soils conference, Tweed Heads, 26-30 August 2002, Poster papers 106-107

Cook FJ, Rassam DW, Carlin GD, Mishke L and Mishke K (2002). FLASSH-Acid Sulfate Soil Drainage Water Quality Model 4th Environmental Engineering Conference, 249-254p

Carlin GD, Thomas E, Truong P, Mischke L, Mischke K and Cook FJ (2002). Vetiver Grass Hedges for Sediment Trapping and Drain Bank Stabilisation in Acid Sulfate Soils 4th Environmental Engineering Conference, 243-247p

Thorburn PJ, Cook FJ and Bristow KL (2002). New water-saving production technologies: Advances in trickle irrigation In Water for Sustainable Agriculture in Developing Regions – More Crop from Every Scarce Drop (Eds M Yajima, K Okada and N Matsumoto) Proceedings 8th JIRCAS International Symposium, Tsukuba, Japan, 27-28 November, 2001: 53-62

Electorowicz M, Cook FJ and Rassam DW (2002). Impact of pH and redox potential changes on acidic sulphate soils Paper presented at Annual Conference of the Canadian Society of Civil Engineering, Montreal, Quebec, Canada, 5-8 June 2002, 7p

Powell B, Cook F, Smith D, Adams J and Johnston P (2002). Predicting acid drainage from acid sulfate soils in the Pimpama river catchment, Australia Transactions of 17th International Union of Soil Science Congress, Bangkok, 13-21 August 2002. Paper 1952

Cook FJ, Pankhurst CE, D’Amato C, Fanning DJ and Carlin GD (2003). Effects of trash incorporation and soil water content on the rate of breakdown of soluble sugars in the soil following sugarcane harvesting Proc. Aust. Soc. Sugar Cane Technol., 25: (CD) 8p

Gardner EA, Rayment GE, Powell B, Cook FJ, Smith CD and Hey KM (2000). Distribution, behaviour and management of acid sulphate soils 2 Bruce RC, Johnston M and Rayment GE (eds). Working Papers, Environmental Short Course for Sustainable Sugar Production, Course Manual. CRC Sugar, 118-139

Cook FJ, Rassam DW, Gardner EA and Carlin GD (2000). What controls water tables in low permeability acid sulfate soils Australian Society of Sugar Cane Technologists Conference, Bundaberg, 2-5 May 2000

Jayawardane NS, Biswas TK, Blackwell J, Cook FJ (2000). A review of the FILTER technique for treatment and reuse of sewage effluent and other wastewater 2 In Urban Waste Management in Australasia- Pacific Region, Oxford/IBH

Jayawardane NS, Biswas TK, Blackwell J and Cook FJ (2000). Salinity and sodicity management in the filter system for treating saline effluent on a saline-sodic soil Sodicity conference: Sodicity issues in Agricultural Industries – Current Research and Future Directions. Institute of Sustainable Irrigated Agriculture (ISIA), Tatura, Victoria on 28 February 2000

Thorburn PJ, Cook FJ and Bristow KL (2000). Assessing soil wetting patterns for improved design of trickle irrigation for sugarcane Proc. Aust. Soc. Sugar Cane Technologist, 22:236-243

Cook FJ, Rassam D, Carlin GD and Gardner EA (2000). Acid Flow From Acid Sulphate Soils: Measurements and Modelling of Flow To Drains In Sustainable Environmental Solutions for Industry and Government. 3rd Queensland Environmental Conference, The Institute of Engineers, Australia, 25-26 May 2000, 195-199

Cook FJ, Rassam D, Blunden B, Gardner EA and Carlin GD (2000). Irrigation and drainage: Effects on acidity export from acid sulfate soils In Slavich PG (Ed) Proceedings of Workshop on Remediation & Assssment of Broadacre Acid Sulfate Soils, 31 August - 2 September 1999. Southern Cross University. 78- 87p

Bristow KL, Cote CM, Thorburn PJ and Cook FJ (2000). Soil wetting and solute transport in trickle irrigation systems In: Proceedings of the 6th International Micro-irrigation Congress, 23-26 October 2000, Cape Town. South African National Association of Irrigation and Drainage, Cape Town, pp 4.2.1-4.2.9

Cook FJ, Rassam DW, Gardner EA and Carlin GD (2000). Acid flux to drains in acid sulfate soils: Some research results In Acid Sulfate Soils - Short Course and Central Queensland Issues, Short Papers. Watling KM, Hey KM, Eldershaw VJ, Ahern CR and Anorov JM (eds), Cairns 10-11 April 2000. Department of Natural Resources, Indooroopilly, Queensland, Australia. 9-1 to 9-3

Sands J, Matthews P, Gardner EA, Cook FJ, Jayawardane NS and Blackwell J (2000). Comparison between conventional irrigation/wet-weather storage and FILTER for land based effluent disposal systems Paper No. SW3 presented at the conference on Engineering in Agriculture, April 2000, Adelaide, SA, 8p

Clouston SD, Sands JM, Gardner EA, Cook FJ, Matthews PL and ??? (2001). Physico-chemical evaluation of FILTER on a vertisol for tertiary wastewater treatment - Its performance in a subtropical environment Proceedings of the Soil Conference: New Horizons for a New Century. Eds JA Adams & AK Metherell, 3-8 December 2000, ASSSI/NZSSS, vol 2, 61-62

Cook FJ, Rassam DW, Carlin GD, Gardner EA and Bohl HP (2001). Semi-empirical model of acid generation and discharge from acid sulfate soils – FLASSH1 Aquatic Environments Conference, Townsville, Nov 20-23, 2001

Cook FJ, Rassam DW, Carlin GD, Gardner EA and Millar G (2001). Modelling and measuring water and acid fluxes in an acid sulphate soil Proceedings, 4th International Conference on Environmental Chemistry and Geochemistry in the Tropics, Townsville, Australia, 7-11 May 2001 p7

Mitchell DC, Bohl HP, Roth CH and Cook FJ (2001). The dynamics of a shallow perched watertable on a heavy soil in the lower Herbert valley Proceedings of the Australian Society of Sugar Cane Technologists, 23:148-153

Cook FJ, Knight JH and Wooding RA (1998). Groundwater flow down a slope: A re-examination of the problem In Proceedings of World Congress of Soils Conference, Montpellier, 20-26 August 1998, No. 1358. 6p

Jayawardane NS, Blackwell J, Cook FJ, Wallet D and Nicoll G (1998). Sustainable management of the FILTER technique for cost-effective wastewater treatment In WaterTech conference proceedings, Brisbane 1988, Australian Water and Wastewater Association

Cook FJ, Jayawardane NS and Tan Y (1998). Development of FILTMOD - Models for managing wastewater land treatment filter systems In WaterTech conference proceedings, Brisbane 1988, Australian Water and Wastewater Association

Topp GC, Cook FJ, Dow B, Edwards M, Gregorich EG and Curnoe WE (1998). Tillage practices and oxygen supply in corn rooting zones 2 ASA-SSSA National Conference, 31 October – 4 November 1999, Baltimore

Cook FJ, Suzuki MM, Gardner EA and Rayment GE (1998). Measurement and modelling of acid export from acid sulphate soils used for sugar production Proceedings of the Australian Society of Sugar Cane Technologists, 20: 550

Cook FJ, Gardner EA and Carlin G (1999). Paper 8. Research results - Acid production and export from canelands case study In: Acid sulfate soils: Short course and North Queensland Issues, Abstracts. Eds. Ahern, C.R., Eldershaw, K.M. and Anorov, V. Townsville, 1-2 February, 1999. Queensland Department of Natural Resources, Indooroopilly, Queensland, Australia

Cook FJ, Gardner EA and Carlin GD (1999). Acid drainage from canelands: Quantities exported and mechanisms of production Proc. Aust. Soc. Sugar Cane Technologist, 21: 246-258

Biswas TK, Jayawardane NS, Blackwell J, Christen EW and Cook FJ (1999). The 'FILTER' technique for year round treatment of wastewater pp 59-65. In Proc. On-site 99-making (?) on-site wastewater systems work (Ed. R. Patterson), Lanfax Laboratories, PO Box W90, Armidale NSW 2350, Australia

Biswas TK, Jayawardane NS, Blackwell J and Cook FJ (1999). Soil hydraulic properties and pollutant removal in a pilot FILTER system used for treating Griffith sewage effluent pp. 226.-231. MDBC Groundwater Conference Proceedings 1999, 14-16 September, Griffith NSW 2680, Australia

Cook FJ, Gardner EA and Carlin GD (1999). Paper 21. ASS impacts in canelands - Preliminary results from Pimpama research Acid Sulfate Soils and Their Management in Coastal Queensland, Forum and Technical Course. Hey KM, Ahern, CR Eldershaw, VJ, Anorov JM and Watling KM (eds), Brisbane, 21-23 April 1999. Department of Natural Resources, Indooroopilly, Queensland, Australia. 10p

Cook FJ, Rassam DW, Gardner EA, and Carlin GD (1999). The flow of acid to drains from ASS: Some research results Acid Sulfate Soils - Short Course and Central Queensland Issues, Short Papers. Hey KM, Watling KM, Ahern CR and Anorov JM (eds), Mackay 3 - 4 November, 1999. Department of Natural Resources, Indooroopilly, Queensland, Australia

Gardner EA, Morton D, Sands J, Mathews P, Cook FJ and Jayawardane NS (1999). The FILTER system for tertiary treatment of sewage effluent by land application – its performance in a subtropical environment The Third International Symposium on Wastewater Reclamation. Paris. July 2000

Cook FJ, Rassam DW, Gardner EA, and Carlin GD (2000). Drained acid sulfate soils: Pathways of acid export Acid Sulfate Soils: Environmental Issues, Assessment and Management. Ahern CR, Hey KM, Watling KM and Eldershaw VJ (eds), Brisbane 20-22 June 2000. Department of Natural Resources, Indooroopilly, Queensland, Australia. 38-1to 38-11

Cook FJ (1981). Hydraulic properties of four soils from the Heretaunga Plains and prediction of their water behaviour during border-dyke irrigation New Zealand Soil News, 29 (6):184

Cook FJ and Bailey J (1983). Prediction and measurement of the wetting pattern under a trickle irrigation emitter New Zealand Hydrological Society Annual Symposium, Meteorological Society of New Zealand Annual Conference. Abstracts of Papers. Otago University Extension, Dunedin, 1983. pp. 145-149

Cook FJ, Beecroft FG, Joe EN and Balks MR (1986). Flow of water in a gravelly sandy loam from a point source Proceedings New Zealand Society of Soil Science and Australian Society of Soil Science Inc. Joint Conference, 20-23 Nov., 1986, Rotorua, New Zealand. pp.37-42

Watt JPC, Griffiths E, Cook FJ and Joe EN (1986). Indicators and criteria for interpreting the hydraulic character of soils Transactions of the 13th Congress of the International Society of Soil Science, Hamburg, 1986, vol. 2, 1986: 195-196

Cook FJ (1986). Understanding and using "SWAMP" Proceedings of the third National Land Drainage Seminar, Waikato University, Hamilton, New Zealand, 18-21 August 1986 (Eds. K.W. McAuliffe, J.M.C. Boag) Massey University, Palmerston North, 1986. pp. 60-64

Speir TW, Hart PBS, Cook FJ, Hoglund JH, Stewart R and Butcher MG (1989). Land treatment of meat processing effluent - A scientific approach Proceedings of Waste Management Institute New Zealand Inc. Conference, 8-10 November 1989, Wellington. pp 1-12

Fenton JA and Cook FJ (1991). The significance of hydrology in wastewater land treatment systems Challenges for Sustainable Development, Proceedings International Hydrology and Water Resources Symposium, Perth, 1991, 142-152. (Institution of Engineers: Canberra). pp 142-150

Topp GC, Cook FJ and Wires KC (1994). Non-limiting water range (NLWR) in selected soils and refining the aeration limits Proceedings of International Society of Soil Science Conference, Acapulco, Mexico

Jayawardane NS, Cook FJ, Blackwell J and Nicoll G (1995). Modelling the hydraulic flows of the filter technique for sewage effluent treatment around-the-year Proceedings Vol. 1 AWWA 16th Federal Convention, Sydney, April 1995. 1025-1029

Cook FJ, Kelliher FM, Thomas SM and Whitehead D (1996). Comparison of measured and predicted fluxes of CO2 Trans. Am. Geophys. Union, 77(22): W36-W37

Cook FJ and Knight JH (1996). Oxygen Transport to Plant Roots: Implications for Soil Aeration Australian and New Zealand National Soils Conference, University of Melbourne, 1-4 July 1996. Vol.2, Oral Papers: 51-52

Strizaker RJ, Cook FJ and Knight JH (1997). How to space trees in a paddock for control of dryland salinity: a first approximation Agroforestry for Sustainable Land –use: Fundamental Research and Modelling, Temperate and Mediterranean Applications. Montepellier, 23-29 June 1997. 169-173

Cook FJ (1976). The effect of irrigation on the drainage behaviour of the Tokomaru silt loam in relation to the soil's physical properties Dip. Ag. Sci. Thesis, Massey University, 1976. 22 p

Cook Freeman John. (1980). Hydraulic properties of four soils from the Heretaunga Plains and prediction of their soil water behaviour during border-dyke irrigation M.Phil. Thesis, Massey University, 1980. 144 p

Cook FJ (2002). Soil Respiration and Gas Transport: Modelling and Measurement of the Phenomena PhD thesis, University of Technology, Sydney. 163p

Cook FJ (1999). Drainage role in Acid management Assay 25

Cook FJ (2000). Gas measurements of oxidation rate Assay 26

Cook FJ (2001). Drain water and iron Assay 28

Cook FJ (2002). Lime slots to reduce acidity in drainage waters Assay, 31

Cook FJ (1999). Rock Point – Southern Queensland Assay 22

Cook FJ and Gardner E (1998). Measuring acid drainage from acid sulphate soils Australian Sugarcane, 1(6):13-15